FilFinder¶
The entire algorithm is run through fil_finder_2D
. Nominally, this is the only portion of the package that needs to be accessed for users.
Filament profiles can be extracted using the width_profiles
module.
Source Code¶
Functions¶
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Calculate radial profiles along the main extent of a skeleton (ie. |
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Run the tests for the package. |
Classes¶
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Extract and analyze filamentary structure from a 2D image. |
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Analysis and properties of a 2D filament. |
Analysis and properties of a single filament object. |
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This class acts as an overall wrapper to run the fil-finder algorithm on 2D images and contains visualization and saving capabilities. |