Index

A

analyze_skeletons() (fil_finder.FilFinder2D method) (fil_finder.FilFinderPPP method) (fil_finder.FilFinderPPV method)

B

branch_lengths() (fil_finder.FilFinder2D method) branch_properties (fil_finder.Filament2D attribute)

branch_pts() (fil_finder.Filament2D method) branch_table() (fil_finder.Filament2D method) branch_tables() (fil_finder.FilFinder2D method)

C

covering_fraction() (fil_finder.FilFinder2D method) create_mask() (fil_finder.FilFinder2D method) (fil_finder.FilFinderPPP method) (fil_finder.FilFinderPPV method)

curvature (fil_finder.Filament2D attribute) (fil_finder.FilFinder2D attribute) curvature_branches (fil_finder.Filament2D attribute) (fil_finder.FilFinder2D attribute)

E

end_pts (fil_finder.Filament2D attribute) (fil_finder.FilFinder2D attribute)

exec_rht() (fil_finder.FilFinder2D method)

F

fil_finder module Filament2D (class in fil_finder) filament_model() (fil_finder.FilFinder2D method) filament_positions() (fil_finder.FilFinder2D method) filament_profile() (in module fil_finder)

FilamentNDBase (class in fil_finder) FilFinder2D (class in fil_finder) FilFinderPPP (class in fil_finder) FilFinderPPV (class in fil_finder) find_widths() (fil_finder.FilFinder2D method) flatten_threshold (fil_finder.FilFinder2D attribute) from_pickle() (fil_finder.Filament2D static method)

G

graph (fil_finder.FilamentNDBase attribute)

I

image (fil_finder.FilFinderPPV attribute) image_slicer() (fil_finder.Filament2D method)

intersec_pts (fil_finder.Filament2D attribute) (fil_finder.FilFinder2D attribute)

L

length() (fil_finder.Filament2D method)

lengths() (fil_finder.FilFinder2D method) longpath_pixel_coords (fil_finder.FilamentNDBase attribute)

M

make_skeleton_minbranchlength() (fil_finder.FilFinder2D method) median_brightness() (fil_finder.Filament2D method) (fil_finder.FilFinder2D method)

medskel() (fil_finder.FilFinder2D method) model_image() (fil_finder.Filament2D method) module fil_finder

N

network_plot_3D() (fil_finder.FilFinderPPV method)

network_plot_3D_plotly() (fil_finder.FilFinderPPV method)

O

orientation (fil_finder.Filament2D attribute) (fil_finder.FilFinder2D attribute) orientation_branches (fil_finder.Filament2D attribute) (fil_finder.FilFinder2D attribute)

orientation_hist (fil_finder.Filament2D attribute) output_table() (fil_finder.FilFinder2D method)

P

pixel_coords (fil_finder.FilamentNDBase attribute) pixel_extents (fil_finder.FilamentNDBase attribute) plot_data_mask_slice() (fil_finder.FilFinderPPV method) plot_graph() (fil_finder.Filament2D method) plot_radial_profile() (fil_finder.Filament2D method) plot_rht_distrib() (fil_finder.Filament2D method)

position() (fil_finder.FilamentNDBase method) pre_recombine_mask_corners (fil_finder.FilFinder2D attribute) pre_recombine_mask_objs (fil_finder.FilFinder2D attribute) preprocess_image() (fil_finder.FilFinder2D method) (fil_finder.FilFinderPPP method) (fil_finder.FilFinderPPV method) profile_analysis() (fil_finder.Filament2D method)

R

radprof_errors (fil_finder.Filament2D attribute) radprof_fit_fail_flag (fil_finder.Filament2D attribute) radprof_fit_table() (fil_finder.Filament2D method) radprof_fwhm() (fil_finder.Filament2D method) radprof_model (fil_finder.Filament2D attribute) radprof_params (fil_finder.Filament2D attribute) radprof_parnames (fil_finder.Filament2D attribute)

radprof_table() (fil_finder.Filament2D method) radprof_type (fil_finder.Filament2D attribute) radprofile (fil_finder.Filament2D attribute) rht_analysis() (fil_finder.Filament2D method) rht_branch_analysis() (fil_finder.Filament2D method) ridge_profile() (fil_finder.Filament2D method) ridge_profiles() (fil_finder.FilFinder2D method)

S

save_fits() (fil_finder.Filament2D method) (fil_finder.FilFinder2D method)

save_stamp_fits() (fil_finder.FilFinder2D method) skeleton() (fil_finder.Filament2D method) skeleton_analysis() (fil_finder.Filament2D method)

T

test() (in module fil_finder) to_pickle() (fil_finder.Filament2D method)

total_intensity() (fil_finder.Filament2D method) (fil_finder.FilFinder2D method)

W

width_analysis() (fil_finder.Filament2D method)

width_fits() (fil_finder.FilFinder2D method) widths() (fil_finder.FilFinder2D method)